On 07/13/2011 04:10 PM, Nolan, Tracy wrote: > Hi, > > I'm trying to map fcMRI data to inflated PALS atlas brains. > I may have gotten overambitious, trying to load left and right and cerebellum > into the same spec file. > This was a clean install on a 64-bit windows machine, but I did necessarily > dirty it up by loading lots of files from previous installs and builds. > Having done that, I am left with this question, since I do appear to have the > appropriate cerebellar .coord and .spec files in the working directory. > > When trying to "map spec file to atlas" 711-2C, I get an error that leads me > to wonder if there is a FLIRT-CBLM-MASK.nii.gz somewhere in the sumsdb. I > couldn't find it. Do I need it? Huh? I'm not familiar with FLIRT-CBLM-MASK.nii.gz, but based on the name, I'm guessing it's more likely to be in avg152 space than 711-2C.
Your fcMRI is likely to be in 711-2*, since you're at Wash U. Where did FLIRT-CBLM-MASK.nii.gz come from? Can you capture the exact error? > What else should I delete, if that isn't something I really need? > No need to start deleting stuff, typically, but admittedly, I tend to use hem-specific spec files. Typically all you need for mapping is a volume, fiducial coord (in same space as volume to be mapped), and topo file. Mapping spec file to atlas gives you the coord and topo files for free, so all you should need are the volume to be mapped and a target/visualization spec into which Caret will insert your output metric entry, so you can view the results. Let me know if you want me to stop by on the way back from workout (around 1:10pm). > Thanks, > Tracy Nolan > Research Assistant > Wash U St. Louis > [email protected] _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
