Hi Donna, Thank you for your reply. I actually was using the old version because I was doing my analyses over the weekend and our sysadmin (quite rightly) waited until Monday to install the newest version. The newest version worked perfectly.
Thank you! Kx On 7 November 2011 06:45, Donna Dierker <[email protected]> wrote: > This is an older version of Caret, and it is a very minor problem. > > For some reason, the first of the 12 Buckner subjects that went into the > PALS_B12 atlas had a deformed fiducial surface with some spikiness -- a > problem that is fixed by a small number of smoothing iterations after > registration. This occurred with all but the first subject. And you never > map just to the first subject. You map to either the average fiducial > surface or to all 12 subjects' surfaces, and then average the result. So > these small spikes have negligible effect on those results. > > This was fixed in February 2011, Caret version 5.62. > > By any chance are you using the older version due to problems with dynamic > libraries in the later version? Your registration form says "Linux" for > the OS. I am just curious. > > > On Nov 6, 2011, at 9:27 PM, Kirstie Whitaker wrote: > > > Hi Everyone, > > > > Firstly, I'm very sorry if this question has been answered elsewhere - I > just joined the mailing list today. I haven't found my answer in the > archives but please feel free to point me to the best search term if this > has already been covered! > > > > When I open up the > Human.PALS_B12.LR.MULTI-FIDUCIAL_FLIRT_fMRI-MAPPER.B1-12.RIGHT.73730.spec > and > Human.PALS_B12.LR.MULTI-FIDUCIAL_FLIRT_fMRI-MAPPER.B1-12.LEFT.73730.spec > files (I have fMRI data processed in FSL that I'd like to display using > caret) the left hemisphere looks very "grainy" while the right hemisphere > looks smooth. (I've attached jpegs of the medial images of these two > hemispheres.) > > > > Is there anything I can do to fix this: make the left hemisphere look > just as good as the right? > > > > I'm using caret v5.616. > > > > Thank you so much, > > > > Kx > > > > -- > > THANK YOU FOR ALL YOUR DONATIONS! > > I did it! I rode for the third time from San Francisco to LA at the > beginning of June. I've now raised around $10,000 for AIDS/LifeCycle and I > couldn't have made such a difference to my friends' lives without all your > support. Thank you! > > ----------------------- > > Kirstie Whitaker > > Doctoral Candidate > > Cognitive Control and Development Laboratory > > Helen Wills Neuroscience Institute > > University of California at Berkeley > > 134 Barker Hall, MC 3190 > > Berkeley, CA, 94707 > > tel: 510 684 2456 > > web: bungelab.berkeley.edu > > > > > <medial_left.jpg><medial_right.jpg>_______________________________________________ > > caret-users mailing list > > [email protected] > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > -- *THANK YOU FOR ALL YOUR DONATIONS! *I did it! I rode for the third time from San Francisco to LA at the beginning of June. I've now raised around $10,000 for AIDS/LifeCycle and I couldn't have made such a difference to my friends' lives without all your support. Thank you! ----------------------- Kirstie Whitaker Doctoral Candidate Cognitive Control and Development Laboratory Helen Wills Neuroscience Institute University of California at Berkeley 134 Barker Hall, MC 3190 Berkeley, CA, 94707 tel: 510 684 2456 web: bungelab.berkeley.edu
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