Dear CARET experts, My name is Andrei Mayer and I´m currently trying to do a 3D reconstruction of Cebus monkey brain in which we injected neurotracers. The plotting of labeled neurons was made in Neurolucida and to do the 3D reconstruction I´m going to use the mid-thickness contour of the cortex. I´m having troubles to export the XML Neurolucida files to CARET. The problem is that after doing it the plotted cells disappeared (in CARET). I can see and edit the contours, but for some reason the cells aren´t there.
That´s how I´m proceeding: In Neurolúcida I´m opening all contour files as a unique serial sections file. That way I can organize the sections, putting them in order and setting the distance between them. At this point I still can see both contours and cells. I then save this file in the XML format like it is described in the tutorial. The problem is when I Upload this XML file into CARET. It seems that only the contours were uploaded. I can´t see the cells. Therefore I can´t project them to the surface. Best, Andrei ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
