----------------------------------------
> From: [email protected]
> Date: Fri, 24 Feb 2012 15:55:47 -0600
> To: [email protected]
> Subject: Re: [caret-users] FNIRT stereotaxic space
>
> Only the Conte69 surfaces are available for FNIRT mapping; there are no PALS
> surfaces that have been registered using FNIRT -- just FLIRT and the other
> methods listed here:
>
> http://brainvis.wustl.edu/help/pals_volume_normalization/
>
> The Conte69 surfaces are on the new fs_LR standard mesh (164k vertices),
> which is described in this paper:
>
> http://www.ncbi.nlm.nih.gov/pubmed/22047963
>
> The datasets for this paper are here:
>
> HUMAN_ATLAS_CC11
> http://sumsdb.wustl.edu/sums/directory.do?id=8286149
>
> So you could map to the Conte69 FNIRT surfaces, and then perhaps use one of
> the fs_LR datasets from this paper to visualize your results (e.g., on the
> fs_LR inflated surface).
.. right .. thank you. I noticed there were no flat maps either in the paper
or the fs_LR datasets. Is there any particular reason to prefer inflated and
very inflated four-hemisphere display (left/right medial lateral views) to
two-hemisphere (left/right) flat maps? Easier to orient on the inflated
cortical surfaces?
.. again, thank you for your help,Sergei
>
>
> On Feb 24, 2012, at 2:44 PM, Sergei Bogdanov wrote:
>
> >
> > Dear list,
> >
> > I downloaded Caret v 5.65 hoping to take advantage of the newly added FNIRT
> > stereotaxic space but when I try to map Volume (Metric FSL processed data
> > in standard MNI space) to Surface, having chosen a couple of volumes,
> > proceeded to Atlas Surface Selection dialog box, selected "FNIRT" under
> > space pulldown, I see only Conte69 mid thickness Left and Right maps and
> > not expected "PALS_B12 Multi-Fid Map Left/Right hemisphere (73730 nodes),
> > MNI 305 (FNIRT) space" or something to that effect a la "FLIRT" pulldown.
> >
> > Am I missing something obvious here? Should I use FLIRT stereotaxic space
> > option to project FLIRT+FNIRT registered SPMs to PALS_B12 atlas?
> >
> > Thanks you,
> > Sergei
> >
> >>
> >>
> >> Caret 5.65 is released. It contains these fixes and added features:
> >>
> >> * WashU 711-2* PALS-B12 left hem mapping only: Fix a problem with PALS_B12
> >> left case 03 and average fiducial surfaces
> >> (http://brainvis.wustl.edu/help/wustl_origin/align2.2).
> >> * Add an error check in case a file is truncated.
> >> * Add FNIRT stereotaxic space and Conte69 (FNIRT) surfaces as map to atlas
> >> options.
> >> * Add myelin mapping features
> >> (http://brainvis.wustl.edu/wiki/index.php/Caret:Operations/MyelinMapping#Preliminaries:_Producing_brain_surfaces_in_FreeSurfer).
> >>
> >>
> >
> > _______________________________________________
> > caret-users mailing list
> > [email protected]
> > http://brainvis.wustl.edu/mailman/listinfo/caret-users
>
>
> _______________________________________________
> caret-users mailing list
> [email protected]
> http://brainvis.wustl.edu/mailman/listinfo/caret-users
_______________________________________________
caret-users mailing list
[email protected]
http://brainvis.wustl.edu/mailman/listinfo/caret-users
