I'd tweak your path so it finds /usr/local/caret/bin before /home/pengh/Templates (or some subdirectory below it that contains the caret5 executable).
It sounds like you have caret5 (the executable -- not the distribution) installed in multiple places, and when you enter caret5, it finds the one under /home/pengh/Templates first. But I worry there are other files missing from that directory you might need later. Put more simply, make sure you use caret5 from a complete installation directory. On Nov 14, 2012, at 11:07 AM, "Peng, Huiling" <[email protected]> wrote: > There is only English installed. Here is some updates. I saved caret in > /usr/local/caret, and save the spec file in /home/pengh/Templates. Meanwhile, > I set path in .bashrc as /usr/local/caret/bin_linux64. It looks like caret is > trying to find those cood and topo files under /home/pengh/Templates and > couldn't find them. So I copied all files under > /usr/local/caret/data_files/fmri_mapping_files/ to /home/pengh/Templates. Now > the error window not show up any more. But I am wondering whether it is > correct way to save those files. Any suggestion? > > Thanks, > Huiling > > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Donna Dierker > Sent: Wednesday, November 14, 2012 10:07 AM > To: Caret, SureFit, and SuMS software users > Subject: Re: [caret-users] Error creating BrainSet for mapping data > > Do you have a non-English character set installed, by any chance? > > This is something that varies by platform and window system, but is usually > controlled by a personal language setting. Make sure it's just English. Log > out and back in, if needed, before restarting caret. > > > On Nov 14, 2012, at 9:32 AM, "Peng, Huiling" <[email protected]> wrote: > >> I checked the directory and the file: Human.PALS_B12.LEFT >> (RIGHT)_AVG_B1-12.FIDUCIAL_FLIRT.clean.73730.coord did exist. Could it be >> any other reason? >> >> Thanks, >> Huiling >> ________________________________________ >> From: [email protected] >> [[email protected]] on behalf of Donna Dierker >> [[email protected]] >> Sent: Tuesday, November 13, 2012 5:22 PM >> To: Caret, SureFit, and SuMS software users >> Subject: Re: [caret-users] Error creating BrainSet for mapping data >> >> This could happen if your distribution didn't unzip completely, or some >> files got inadvertently removed. >> >> Suppose your caret distribution is in /usr/local/caret. Then do this: >> >> cd /usr/local/caret/data_files/fmri_mapping_files >> >> Then do: >> >> ls *FLIRT*coord >> >> If you really don't see the coord file it is complaining about below, then >> your distribution got corrupted somehow. >> >> >> On Nov 13, 2012, at 4:50 PM, "Peng, Huiling" <[email protected]> wrote: >> >>> Hi all, >>> >>> I am pretty new to caret. I only run caret for resting fMRI data. I was >>> able to run it month ago before my linux computer crashed. After I >>> installed a new version of CentOS 6.3 x86_64, it doesn't work correctly any >>> more. I downloaded Caret 5.65 and spec file: >>> Human.PALS_B12.BOTH.TEMPLATE-for-fMRI-MAPPING.73730 >>> >>> After I add data volume, map to Spec file, select all coord files, and >>> finally name data file, it popped out an error window: >>> Error creating BrainSet for mapping data. >>> Human.sphere_6.LEFT_HEM.73730.topo does not exist. >>> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_FLIRT.clean.73730.coord does not >>> exist. >>> >>> >>> >>> >>> Any suggestion is greatly appreciated! >>> >>> >>> Thanks, >>> Huiling >> >> >> _______________________________________________ >> caret-users mailing list >> [email protected] >> http://brainvis.wustl.edu/mailman/listinfo/caret-users >> >> _______________________________________________ >> caret-users mailing list >> [email protected] >> http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
