Here is the Caret cell/foci file format: http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/file_formats/file_formats.html#cellFile
Make sure the surface you're projecting the cells/foci onto is in the same stereotaxic space. If you project talairach coords on a MNI brain, they'll be inside. On Nov 20, 2012, at 8:05 AM, Erin Reid <[email protected]> wrote: > Once you opened the foci file, did you try projecting foci? (Layers: Foci: > Project Foci to Atlas) Make sure you have a Fiducial surface loaded in order > for this to work. > > Erin > > > On 11/19/12 5:43 PM, Nimit Sohoni wrote: >> Yes, I have, thanks. The problem I have is that I just want to import foci >> that are in terms of X,Y,Z coordinates and view them on the brain, I don't >> want to import study metadata or anything as this is an exercise not >> associated with any particular study. Can one do this? >> >> On Mon, Nov 19, 2012 at 10:25 AM, Donna Dierker <[email protected]> >> wrote: >> Hi Nimit, >> >> Have you read the tutorials here: >> >> http://sumsdb.wustl.edu/sums/stereotaxictocaretfoci.do;jsessionid=pygt0bden1 >> >> Donna >> >> >> On Nov 17, 2012, at 1:47 PM, Nimit Sohoni <[email protected]> wrote: >> >> > Here is the excel file layout: >> > >> > Coordinates in MNI space >> > ROI# X Y Z >> > 1 "some coordinates" >> > 2 "some coordinates" >> > etc. >> > >> > I have converted it to a .csv.foci file but I do not understand how to map >> > it. When I try to import it nothing shows up except the regular brain >> > surface which I import from the spec file. Do I need to delete some of the >> > excel cells, or add some? >> > Please help soon. Thanks. >> > _______________________________________________ >> > caret-users mailing list >> > [email protected] >> > http://brainvis.wustl.edu/mailman/listinfo/caret-users >> >> >> _______________________________________________ >> caret-users mailing list >> [email protected] >> http://brainvis.wustl.edu/mailman/listinfo/caret-users >> >> >> >> _______________________________________________ >> caret-users mailing list >> >> [email protected] >> http://brainvis.wustl.edu/mailman/listinfo/caret-users > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
