I think the most efficient way to help is for you to put the volume you are mapping (a label/ROI volume) along with the surface files together in a single directory, then zip it up and put the zip file here:
http://pulvinar.wustl.edu/cgi-bin/upload.cgi If there is an anatomical volume that aligns with either the surface or the volume, so much the better. (My fuzzy memory recalls a volume with the mouse surface, but if you could save us the trouble of tracking down these files, it would help. On Jun 12, 2013, at 12:30 PM, Ben Jarrett <[email protected]> wrote: > Hello Caret Users, > > I am trying to map a volume set of ROIs to a surface. The surface is from > the spec file Mouse.map015.Cerebral.L(R).16180.spec (I was using the GUI to > map to both sides). However, when the paint file is created the ROIs on the > medial surface of each hemisphere are distorted and many cortical areas seem > to have mapped to slightly the wrong surface “space.” The areas I have are > mostly cortical structures, although some (e.g. nucleus accumbens) are deep > to some of the more surface ROIs. The volume I have is already mapped to the > same coordinate space as the Caret surface, so I wasn’t expecting errors. > > I also tried the command line function (caret_command > –volume-map-to-surface), but in this case I’m not familiar enough with the > command to get it to work correctly (looked at the help call for the function > and looked at old posts – did see one about order for the algorithm input, > but still seemed to error out after following that post) – as I constantly > get the error message “invalid algorithm name” or “algorithm missing” even > though they are put onto the command line. I would appreciate any ideas that > others may have. > > Thank you, > Ben > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
