Hello Caret Users, I am trying to map a volume set of ROIs to a surface. The surface is from the spec file Mouse.map015.Cerebral.L(R).16180.spec (I was using the GUI to map to both sides). However, when the paint file is created the ROIs on the medial surface of each hemisphere are distorted and many cortical areas seem to have mapped to slightly the wrong surface "space." The areas I have are mostly cortical structures, although some (e.g. nucleus accumbens) are deep to some of the more surface ROIs. The volume I have is already mapped to the same coordinate space as the Caret surface, so I wasn't expecting errors.
I also tried the command line function (caret_command -volume-map-to-surface), but in this case I'm not familiar enough with the command to get it to work correctly (looked at the help call for the function and looked at old posts - did see one about order for the algorithm input, but still seemed to error out after following that post) - as I constantly get the error message "invalid algorithm name" or "algorithm missing" even though they are put onto the command line. I would appreciate any ideas that others may have. Thank you, Ben
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