The .bash_profile and/or .bashrc files are appropriate for bash users, but for tcsh, modify like so:
1. If you didn't install caret in /usr/local, then replace /usr/local below with the parent dir where you unzipped caret. 2. Use a text editor, vi, or other editor to append this line to your ~/.cshrc file: set PATH = ($PATH /usr/local/caret/bin_linux64) Note: Replace bin_linux64 in the above line with whatever your actual distribution's subdirectory is. This depends on which linux version you downloaded, but this is a popular one. 3. Save your ~/.cshrc file and open a new terminal window, which hopefully will source the ~/.cshrc file you just edited. 4. In that new terminal window, enter "which caret_command". You should see /usr/local/caret/bin_linux64/caret_command if you appended the line correctly. Note that existing terminal windows still won't find caret_command, unless you enter "source ~/.cshrc" at the command line. This happens automatically when you open a new window, but not in windows that are already open. Logging out and logging back in works, too, but if you somehow make an error in your ~/.cshrc edits, it might cause a hang upon login, so I like just opening a new terminal window for testing purposes. If I messed it up, I can use vi or gedit to fix the ~/.cshrc and try again. On Jun 21, 2013, at 1:17 PM, Colin Reveley wrote: > first: > > http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/installation/caret5_installation.html > > if you installed caret using a package manager, first check in your package > manager that caret_command is installed. It might be a separate package to > caret. Also make sure it's version 5.64 or higher. > > if it's not installed then install it. that might fix it straight away. > > in general you need to find it and tell your system where to find it. > > type > > locate caret_command > > in your home dir is a file .bash_profile and/or .bashrc > > at the end of that file put > > export PATH=$PATH:/<the directory where caret_command is> > > open a new shell. try it again. this assumes bash is your command shell not c > shell or something. > > > > It's a good idea to download caret from the website rather than using > packages anyway. put it in a directory like /home/<you>/programs/ > > unzip it. > > then add /home/you/programs/caret/bin to your path as above > > and if there is a package version installed, uninstall it or they might get > mixed up. > > http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/installation/caret5_installation.html > > On 21 June 2013 18:00, <[email protected]> wrote: > Send caret-users mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > http://brainvis.wustl.edu/mailman/listinfo/caret-users > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of caret-users digest..." > > Today's Topics: > > 1. caret_command freesurfer_to_fs_LR.sh command not found > (wangzhiwei3233) > > > ---------- Forwarded message ---------- > From: wangzhiwei3233 <[email protected]> > To: <[email protected]> > Cc: > Date: Fri, 21 Jun 2013 23:17:24 +0800 > Subject: [caret-users] caret_command freesurfer_to_fs_LR.sh command not found > Hellow caret experts, > when I run freesurfer_to_fs_LR.sh, there are many "caret_command: command not > found". > my operation system: Linux rhel6.2 > I could open caret5 in terminal, but when I run caret_command, the result was > "command not found". > what is the problem? > Thanks! > > -- > James Wang > > > > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users
_______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
