Download this zip file (click on diskette shaped icon next to action pull-down menu):
inter-atlas_deformation_maps.zip http://sumsdb.wustl.edu/sums/download.do?archive_id=8292575 There are pals_L and pals_R subdirs that contain composite paint files you can copy/move into your atlas subdirs. Then use File: Open Data File: type Paint to open the paint files. On Jul 29, 2013, at 10:09 AM, "Yang, Daniel" <[email protected]> wrote: > Hi Donna, > > Sure! As I said I'm a newbie to caret, so all I did is very basic. I > basically downloaded the Apple Macintosh 64-bit version of Caret v5.65 for my > Mac OS 10.8.4 and then I installed it in /Applications/caret > > there is a subdirectory called data_files/ there. > > within the subdirectory, it shows the following subdirectories: > > CONSTRUCT.SPHERE/ > flat_registration/ > flatten_borders/ > flatten_landmarks/ > fmri_mapping_file/ > icons/ > images/ > REGISTER.LVD.SPHERE/ > REGISTER.SPHERE/ > segmentation/ > segmentation_masks/ > spherical_registration/ > standard_mesh_atlases/ > sulcal_identification/ > > within standard_mesh_atlases/, it shows the following file and subdirectories: > > atlases.csv > Human.PALS.LEFT/ > Human.PALS.RIGHT/ > > within the Human.PALS.RIGHT/ (for example), it shows the following files: > > ForSPHERICAL.REGISTRATION_Human.Class3.bordercolor > Human.colin.RIGHT.RegToPALS_B12.CUTS.CartSTD.clean.73730.topo > Human.colin.RIGHT.RegToPALS_B12.FLAT.CartSTD.clean.73730.coord > Human.PALS_B12.B1-12.DEPTH_ANALYSES_RIGHT.73730.spec <-- THIS is the one I > opened and I cannot see Paint/lobes > Human.PALS_B12.R.border_projection_file_94.borderproj > Human.PALS_B12.R.preferences_file_0caret5_preferences > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL.clean.align.73730.coord > Human.PALS_B12.SPHERE.73730.coord > Human.sphere_6.RIGHT_HEM.73730.topo > > I hope this provides some diagnostic information (maybe?) > I will take a look at the file you suggested soon. Thanks a lot for your help! > > Best, > Daniel > > -- > Yung-Jui "Daniel" Yang, PhD > Postdoctoral Researcher > Yale Child Study Center > New Haven, CT > (203) 737-5454 > > On 7/29/13 10:08 AM, "Donna Dierker" <[email protected]> wrote: > > Hi Daniel, > > Can you send a listing of the directory containing the surfaces you're using? > This will tell us not only whether you're using PALS or fs_LR, but also > whether you are using caret5-style files or workbench (GIFTI) style files. > > This file, for example, will work if you've got fs_LR mesh surfaces in caret5 > format: > > parcels-from-pals_composite_29mar11.164k_fs_LR.label.gii.paint > http://sumsdb.wustl.edu/sums/archivelist.do?archive_id=8288069 > > Donna > > > On Jul 28, 2013, at 8:14 PM, "Yang, Daniel" <[email protected]> wrote: > > Hi Caret Experts, > After studying the QuickStart tutorials, I am able to display the lobe on the > right hemisphere via Paint. > However, when I load the standard meshes, there is no lobe information by > default. > May I ask how do I add lobe information perhaps via Paint? > Specific directory / file locations and steps will be much appreciated! > Thanks, > Daniel > -- > Yung-Jui "Daniel" Yang, PhD > Postdoctoral Researcher > Yale Child Study Center > New Haven, CT > (203) 737-5454 > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
