Wow, does this mean you got past the grind-to-a-halt JRE problem? Excellent!
Here is a script I used to compute mean midthickness surfaces for two groups: http://brainmap.wustl.edu/pub/donna/US/UCLA/ESHITA/gen_mean_fiducials.pared.sh login pub password download But the main command is this one: caret_command -surface-average $OUTCOORD $COORD1 $COORD2 … $COORDn $SHAPE The $SHAPE is a vertex:scalar mapping identical in format to a metric, but it stores the 3D variability for each vertex. You can visualize multiple mean coord files (e.g., one for each DX group) overlaid on the same anatomical volume (e.g., avg152T1) and click on hot spots on your metric, to see if the contours diverge there. You can also compute the distance between the two surfaces directly on the Surface: Measures menu (if I recall correctly). Sounds like you're making great progress! On Jan 30, 2014, at 5:27 PM, Eshita Shah <[email protected]> wrote: > Hello, > > I have created metric files from my TFCE statistical analysis that I wish to > view on my own study-specific generated average coordinate file. How would I > go about doing so? I do have the Conte69 Visualization Atlas, but I am not > sure how to overlay the metric files generated by TFCE to visualize > significant clusters. I would eventually like to do this overlay on my own > average file, not the 164k averages. > > Thank you, > Eshita > > -- > Eshita Shah > University of California, Los Angeles | 2014 > B.S. Neuroscience > [email protected] > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
