I checked, and there was some off-list exchange between me and the poster, but it didn't address this error, per se.
The solution for this user was to use mri_convert to reorient rawavg.mgz, which was in sphinx orientation, the translate per http://brainvis.wustl.edu/pipermail/caret-users/2012-July/005618.html. It's not at all clear to me how that relates to the scene creation errors below, but I'm summarizing the off-list exhchange. On Feb 7, 2014, at 8:23 AM, Caspar M. Schwiedrzik <[email protected]> wrote: > Hi! > > I am running into some error messages try to align a Freesurfer surface to > the F99. > The errors arise in the Stage-3.FS-to-F99.sh script and have been described > on the list before: > https://www.mail-archive.com/[email protected]/msg02854.html > > Specifically, I am getting the following messages: > > BrainSet construction error: Expected '>' or '/', but got '[0-9]'. > SURFACE DISTORTION ERROR: unable to find second surface. > > and > > SCENE CREATION ERROR: Expected '>' or '/', but got '[0-9]'. > Expected '>' or '/', but got '[0-9]'. > Expected '>' or '/', but got '[0-9]'. > > Unfortunately, the previous thread did not provide a solution. > Is there a known way to get around this? > Thanks, Caspar > > > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
