This ended up being a well-intentioned script doing a global replacement on a coord & surface_shape file, but that replacement introduced non-integer characters into the Dim0 XML attribute. So, if you see an error like this:
>> BrainSet construction error: Expected '>' or '/', but got '[0-9]'. Try "grep Dim0 myfile" and make sure this attribute is set to an integer (e.g., 73730 -- not 74k_f99). On Feb 7, 2014, at 10:07 AM, Donna Dierker <do...@brainvis.wustl.edu> wrote: > I checked, and there was some off-list exchange between me and the poster, > but it didn't address this error, per se. > > The solution for this user was to use mri_convert to reorient rawavg.mgz, > which was in sphinx orientation, the translate per > http://brainvis.wustl.edu/pipermail/caret-users/2012-July/005618.html. > > It's not at all clear to me how that relates to the scene creation errors > below, but I'm summarizing the off-list exhchange. > > > On Feb 7, 2014, at 8:23 AM, Caspar M. Schwiedrzik > <cschwie...@mail.rockefeller.edu> wrote: > >> Hi! >> >> I am running into some error messages try to align a Freesurfer surface to >> the F99. >> The errors arise in the Stage-3.FS-to-F99.sh script and have been described >> on the list before: >> https://www.mail-archive.com/caret-users@brainvis.wustl.edu/msg02854.html >> >> Specifically, I am getting the following messages: >> >> BrainSet construction error: Expected '>' or '/', but got '[0-9]'. >> SURFACE DISTORTION ERROR: unable to find second surface. >> >> and >> >> SCENE CREATION ERROR: Expected '>' or '/', but got '[0-9]'. >> Expected '>' or '/', but got '[0-9]'. >> Expected '>' or '/', but got '[0-9]'. >> >> Unfortunately, the previous thread did not provide a solution. >> Is there a known way to get around this? >> Thanks, Caspar _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
