Hi - I'm trying to run myelin mapping. I've processed my data with FreeSurfer v5.3, applied freesurfer_to_fs_LR.sh, downloaded the Conte69 atlas, and followed all the steps outlined on Caret:Operations/MyelinMapping. I obtained the L.MyelinMapping.metric, R.MyelinMapping.metric, T1wDividedByT2w.nii.gz, and T1wDividedByT2w_ribbon.nii.gz files for a single subject.
I'm running into problems when trying to view the myelin map using caret5. I generated a spec file using caret_command -spec-file-create subj1039 both Individual -add-files-in-directory But when I tried to load the MyelinMapping metrics I got an error indicating that the MyelinMapping.metrics have a different number of nodes. I've tried overlaying the myelin map on several surfaces, but I keep getting the different number of nodes error. I'm a new caret user and am at a loss for how to troubleshoot this. I'd appreciate any suggestions. Thanks!
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