Dear Donna, thank you so much for your reply. Indeed I managed to get the info I needed using the Statistical Paint Report and a very stripped down spec file (so that the report contains only the relevant info). However I also prefer scripts, so I will have a look at them (the caret_command must be a goldmine indeed)
all the best, leonardo On Tue, Jun 30, 2015 at 7:00 PM, <caret-users-requ...@brainvis.wustl.edu> wrote: > Send caret-users mailing list submissions to > caret-users@brainvis.wustl.edu > > To subscribe or unsubscribe via the World Wide Web, visit > http://brainvis.wustl.edu/mailman/listinfo/caret-users > or, via email, send a message with subject or body 'help' to > caret-users-requ...@brainvis.wustl.edu > > You can reach the person managing the list at > caret-users-ow...@brainvis.wustl.edu > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of caret-users digest..." > > > Today's Topics: > > 1. Re: statistical report on areal enlargement (Donna Dierker) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 29 Jun 2015 13:54:26 -0500 > From: Donna Dierker <do...@brainvis.wustl.edu> > To: "Caret, SureFit, and SuMS software users" > <caret-users@brainvis.wustl.edu> > Subject: Re: [caret-users] statistical report on areal enlargement > Message-ID: <51bf4f46-ced1-4792-8983-ed1dea6ae...@brainvis.wustl.edu> > Content-Type: text/plain; charset=iso-8859-1 > > Hi Leonardo, > > It is possible that one more skilled than I could get Statistical Paint > Report to do what you want with less trouble. But for me, scripting it via > the command line would be more straightforward. Have a look at two scripts > here: > > http://brainmap.wustl.edu/pub/donna/WUSTL/BURTON/SCRIPTS/anova_two_way.sh > > http://brainmap.wustl.edu/pub/donna/WUSTL/BURTON/SCRIPTS/metric_region_mean.sh > login pub > password download > > The anova_two_way.sh one has this bit: > > caret_command -surface-region-of-interest-selection $COORD $TOPO $ROI > $ROI -paint $PAINT 1 $PAINT_NAME ANDNOT > > And the metric_region_mean.sh has lines that might be handy. > > See if you can frankenstein them together to do what you need, because I > suspect you will get tired of selecting each paint name in the Surface: > Region of Interest: select nodes with paint dialog. > > Donna > > > On Jun 29, 2015, at 10:28 AM, Leonardo Cerliani < > leonardo.cerli...@gmail.com> wrote: > > > dear Donna, > > > > I am trying to do something apparently simple, but cannot manage, so I > would like to ask your help. > > > > I have loaded the areal expansion overlay onto the caret (contained in > the CARET_TUTORIAL_SEPT06/COMPARE_MACAQUE_HUMAN directory) and I would like > to have an estimate of the areal expansion for each area in the > (registered) LVE00 paint. Basically, an average areal expansion value over > each LVE00 region. I tried selecting all the nodes in the paint, and to > generate a statistical report, but I get only the average areal expansion > value over all the cortex. Is it really not possible to do that? > > > > thank you in advance for your help, > > leonardo > > > > -- > > Leonardo Cerliani, PhD > > > > Institut du Cerveau et de la Moelle ?pini?re (ICM) > > 47 Boulevard de l'H?pital, UMRS 975 > > Paris, France > > ___ > > {o,o} > > |)__) > > --"-"-- > > http://openlibrary.org/people/leonardocerliani/lists > > > > A brain disconnected from the heart is an airplane without wings > > lc > > > > _______________________________________________ > > caret-users mailing list > > caret-users@brainvis.wustl.edu > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > > > ------------------------------ > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > End of caret-users Digest, Vol 138, Issue 11 > ******************************************** > -- Leonardo Cerliani, PhD Institut du Cerveau et de la Moelle épinière (ICM) 47 Boulevard de l'Hôpital, UMRS 975 Paris, France ___ {o,o} |)__) --"-"-- http://openlibrary.org/people/leonardocerliani/lists A brain disconnected from the heart is an airplane without wings lc
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