I am trying to convert xml to an object and I have run into a problem,
this is with the castor.properties debug set to true:
unable to find FieldDescriptor for 'SEQUENCE' in ClassDescriptor of DASDNA
Ignoring DNA no descriptor was found
Ignoring SEQUENCE no descriptor was found
My mapping is the following:
<?xml version="1.0"?>
<!DOCTYPE mapping PUBLIC "-//EXOLAB/Castor Mapping DTD Version 1.0//EN"
"http://castor.exolab.org/mapping.dtd";>
<mapping>
<class name="edu.mit.wi.omnigene.omnidas.DASDNA">
<field name="DNAs" type="edu.mit.wi.omnigene.omnidas.DNA"
collection="vector">
<bind-xml name="DASDNA"/>
</field>
</class>
<class name="edu.mit.wi.omnigene.omnidas.DNA">
<map-to xml="SEQUENCE"/>
<!--<field name="Range"
type="edu.mit.wi.omnigene.omnidas.RangeImpl">
</field> -->
<field name="ID" type="java.lang.String">
<bind-xml name="id" node="attribute"/>
</field>
<field name="Length" type="long">
<bind-xml name="length" node="attribute"/>
</field>
<field name="SequenceValue" type="java.lang.String" >
<bind-xml name="DNA" node="element"/>
</field>
</class>
<!--
<class name="edu.mit.wi.omnigene.omnidas.RangeImpl"
auto-complete="true">
<map-to xml="SEQUENCE" />
<field name="StartPosition" type="long">
<bind-xml name="start" node="attribute"/>
</field>
<field name="EndPosition" type="long">
<bind-xml name="stop" node="attribute"/>
</field>
</class>
-->
</mapping>
XML FILE:
<?xml version="1.0" standalone="no"?>
<!DOCTYPE DASDNA SYSTEM "http://www.biodas.org/dtd/dasdna.dtd";>
<DASDNA>
<SEQUENCE id="1" start="1" stop="100" version="1.00">
<DNA length="100">
atttcttggcgtaaataagagtctcaatgagactctcagaagaaaattgataaatattat
taatgatataataataatcttgttgatccgttctatctccagacgattttcctagtctcc
agtcgattttgcgctgaaaatgggatatttaatggaattgtttttgtttttattaataaa
taggaataaatttacgaaaatcacaaaattttcaataaaaaacaccaaaaaaaagagaaa
aaatgagaaaaatcgacgaaaatcggtataaaatcaaataaaaatagaaggaaaatattc
agctcgtaaacccacacgtgcggcacggtttcgtgggcggggcgtctctgccgggaaaat
tttgcgtttaaaaactcacatataggcatccaatggattttcggattttaaaaattaata
taaaatcagggaaatttttttaaattttttcacatcgatattcggtatcaggggcaaaat
tagagtcagaaacatatatttccccacaaactctactccccctttaaacaaagcaaagag
cgatactcattgcctgtagcctctatattatgccttatgggaatgcatttgattgtttcc
gcatattgtttacaaccatttatacaacatgtgacgtagacgcactgggcggttgtaaaa
cctgacagaaagaattggtcccgtcatctactttctgattttttggaaaatatgtacaat
gtcgtccagtattctattccttctcggcgatttggccaagttattcaaacacgtataaat
aaaaatcaataaagctaggaaaatattttcagccatcacaaagtttcgtcagccttgtta
tgtcaaccactttttatacaaattatataaccagaaatactattaaataagtatttgtat
gaaacaatgaacactattataacattttcagaaaatgtagtatttaagcgaaggtagtgc
acatcaaggccgtcaaacggaaaaatttttgcaagaatca
</DNA>
</SEQUENCE>
</DASDNA>
I have been working at this for about two days :). Any ideas would
possibly help save my sanity.
Thanks in advance,
Mike
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