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Dan,
I prefer using SEAMAN or MOLEMAN, which are part of G. Kleywegt's X-UTIL package
at the Uppsala Software Factory. SEAMAN is especially nice for making MR models,
and can generate polySer, polyAla, or polyGly models with just a few keystrokes.
One can also do things like replace all of one residue type with another residue
type (eg Trps->Alas), remove loops, and truncate based on Bs.
These utilities are also shell-scriptable for batch processing.
Jacob
[EMAIL PROTECTED] wrote:
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Hi,
I am currently working on developing polyalanine models for molecular
replacement of an ~600 a.a. protein. I was wondering if there is a method
that someone could recommend?
This would be greatly appreciated,
Thanks,
Dan Toogood
Masters Student
University of Saskatchewan, Canada
--
Jacob Corn
The Berger Lab
UC Berkeley - Molecular and Cell Biology
[EMAIL PROTECTED]
phone: 510-643-8893
fax: 510-643-9290
