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Hi Marilyn,
you can do this by following this link:
http://www.ebi.ac.uk/msd-srv/ssm/
Hit the submission key and change to multiple. Then keep adding PDB IDs
or upload your files, then submit your query. You'll receive a
superimposed model of all submitted molecules and a structure based
alignment which you can download in various formats.
Juergen
Yoder, Marilyn wrote:
Hi all,
Is there a program that will output an alignment of multiply
superimposed structures? i.e. the output alignment is not based on
primary sequence alignment, but based on tertiary structure
alignment? This is quite tedious by hand, I'm assuming many have
done this before (?).
Thanks,
Marilyn
Marilyn D. Yoder
Division of Cell Biology & Biophysics
School of Biological Sciences
University of Missouri-Kansas City
5007 Rockhill Rd.
Kansas City, MO 64110-2499
phone 816-235-1503
fax 816-235-1503
--
Jürgen Bosch
Howard Hughes Medical Institute and
University of Washington
Dept. of Biochemistry, K-418
1705 NE Pacific Street
Seattle, WA 98195
Box 357742
Phone: +1-206-616-4542
FAX: +1-206-685-7002
