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Hello
There is a collection of dictionaries in the ccp4 distribution in the
directory tree /lib/data/monomers/a,b, etc.
Refmac5 knows, by default, about some of these residues (amino acids,
heme, nucleotides), but the user must point refmac at a dictionary for
others (cb3, c2o) even though the monomer libraries are in the ccp4
distribution.
Is there a default dictionary file for the "known" monomers that is
being used by refmac? If so, what is it? If there is none, where is the
list of residues that are "known"?
What about links? How can I get refmac to use a link that I've defined
but that isn't in it's default list? (I know about defining distances by
adding link cards to the pdb file, I'm talking about more complete
descriptions.) Where are the dictionaries for "known" links (like Zn-CYS
and S-S)?
Thanks
Sue
--------------------------
Sue Roberts
Dept. of Biochemistry & Molecular Biophysics,
University of Arizona
[EMAIL PROTECTED] (520) 621-8171
