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--- "P.R. Evans" <[EMAIL PROTECTED]> wrote:
> This is a useful function if you are trying to compare different models
> from wherever, eg molecular replacement (indeed I think it's sort of buried
> in Phaser, probably using EMMA)
EMMA doesn't pay any attention to connectivity. It moves each atom
individually. I guess if you are lucky the CA only trick can work, but EMMA
isn't really designed for this purpose.
Phaser uses a different algorithm (it just calls some of the very same
functions used by EMMA). I am not sure if Phaser's superposition algorithm can
be used in isolation. Maybe Randy can tell us?
Cheers,
Ralf
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