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Note, this is true for the "manual" binary installation. If you use the install.sh script, then that should run BINARY.setup for you. But check ccp4.log and ccp4e.log for problems. m On Mon, 12 Jun 2006, Kevin Cowtan wrote: > *** For details on how to be removed from this list visit the *** > *** CCP4 home page http://www.ccp4.ac.uk *** > > > One common cause of the error from any program which produces harvesting > information is if you douwnload the binary packages and don't run the > binary setup script as the final stage of your installation. > > In which case, run it now and it should be fixed. > > This has caught a number of us out, even very experienced people... > > Kevin > > Martyn Winn wrote: > > *** For details on how to be removed from this list visit the *** > > *** CCP4 home page http://www.ccp4.ac.uk *** > > > > > > > > This is coming from the harvesting, which is new in DM for > > version 6.0 > > > > The workaround is to specify the NOHARVEST keyword. > > > > Otherwise, there is something wrong with your ccif > > installation, or the mmCIF dictionary. Do programs > > like truncate and mlphare work? > > > > Cheers > > Martyn > > > > > > On Sun, 11 Jun 2006, Vincenzo Carbone wrote: > > > > > >> > >>can anyone tell me the genesis of this error im getting in DM. ive > >>previously run DM successfully and cannot identify why the error is > >>generated. > >> > >>Thanks. > >> > >>vince > >> > >></pre> > >> > >>>>>>CCIF signal CCIF_NOITEM (severity: Warning) <<<< > >> > >> (Raised in ccif_setup_context) > >>Data name or category "_pdbx_phasing_DM_shell.d_res_high" not defined in > >>dictionary > >> > >> > >>>>>>CCIF signal CCIF_NOITEM (severity: Warning) <<<< > >> > >> (Raised in ccif_output_fmt) > >>Data name or category "_pdbx_phasing_DM_shell.d_res_high" not defined in > >>dictionary > >>Not setting an output format string > >> > >> > >> > >>>>>>CCIF signal CCIF_NOITEM (severity: Warning) <<<< > >> > >> (Raised in ccif_output_fmt) > >>Data name or category "_pdbx_phasing_DM_shell.d_res_low" not defined in > >>dictionary > >>Not setting an output format string > >> > >> > >> > >>>>>>CCIF signal CCIF_NOITEM (severity: Warning) <<<< > >> > >> (Raised in ccif_output_fmt) > >>Data name or category "_pdbx_phasing_DM_shell.reflns" not defined in > >>dictionary > >>Not setting an output format string > >> > >> > >> > >>>>>>CCIF signal CCIF_NOITEM (severity: Warning) <<<< > >> > >> (Raised in ccif_output_fmt) > >>Data name or category "_pdbx_phasing_DM_shell.fom" not defined in dictionary > >>Not setting an output format string > >> > >> > >> > >>>>>>CCIF signal CCIF_NOITEM (severity: Warning) <<<< > >> > >> (Raised in ccif_output_fmt) > >>Data name or category "_pdbx_phasing_DM_shell.delta_phi_final" not defined > >>in dictionary > >>Not setting an output format string > >> > >> > >> > >>>>>>CCIF signal CCIF_CXTRANGE (severity: SEVERE ERROR/FATAL) <<<< > >> > >> (Raised in ccif_get_value) > >>Context -1 out of range (must be between 0 and 20 inclusive) > >> > >> > > > > > > > > > > ************************************************************************** > > * * > > * Dr. Martyn Winn * > > * * > > * Daresbury Laboratory, Daresbury, Warrington, WA4 4AD, ENGLAND * > > * Tel: +44 1925 603455 E-mail: [EMAIL PROTECTED] (personal) * > > * Fax: +44 1925 603825 E-mail: [EMAIL PROTECTED] (CCP4 problems) > > * > > * URL: http://www.ccp4.ac.uk/martyn/martyn.html * > > ************************************************************************** > > > > > > > > ************************************************************************** * * * Dr. Martyn Winn * * * * Daresbury Laboratory, Daresbury, Warrington, WA4 4AD, ENGLAND * * Tel: +44 1925 603455 E-mail: [EMAIL PROTECTED] (personal) * * Fax: +44 1925 603825 E-mail: [EMAIL PROTECTED] (CCP4 problems) * * URL: http://www.ccp4.ac.uk/martyn/martyn.html * **************************************************************************
