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Dear all,
I have a question of SSM in Coot.
When I superimpose two related molecules with SSM in Coot, I got a
very good superimpose. However, I can not find Q score, RMSD in X11
terminal. All I got is only the last section of all the results. That
is, I can not scroll up the earlier sections. Then I use SSM web
server (www.ebi.ac.uk/msd-srv/ssm) to get the detailed section. I
found chain A and chain B RMSD, Q score, etc. However, there is no
overal Q score, RMSD value for the whole comparison.
Does anyone knows how can I get the overal Q scare and RMSD?
Also, I want to know the RMSD of only one region of Ca atoms in the
molecules by lsq script in Coot. I wrote the script below as Coot
manual told me. Yet it did not work. Does anyone know how to run the
script in coot?
simple-lsq-match 86 92 "A" 1 97 103 "A" 0 'CA
Thanks!
