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On Fri, 2006-06-30 at 08:56 +0100, Eleanor Dodson wrote: > I run ncont or distang - under > Structure Analysis - > Analyse Molecular contacts on the GUI. > That will give you any contacts between domain 1 and 2, and the symmetry > operator you need to apply to bring them together. > > Say Domain 1 links to Domain 2 with sym opp -y,x-y,z [1, -1,0] > you need to apply symm op 1-x, -1+x-y,z to domain 2 > > Use pdbset xyzin domain2.pdb xyzout domain2-s1.pdb > symgen 1-x, -1+x-y,z > end > > Then combine domain1 with domain2-s1.pdb to get the linked pdb > > Eleanor And new utility pdb_merge in CCP4 6.0 to join the PDB files. Option NOMERGE to sort out chain IDs. This is if you're not happy with Emacs.... Martyn > > 劉家欣(OZ) wrote: > > > Dear All: > > A crystal dataset was indexed as R3 space group and had 30% amino acid > > sequence identity with the template. > > Because of domain flexibility, split domains were separated to used to > > find out the phase. > > Fortunately, the phase was solved with two domains independently. > > However, this two domains were far from each other. Is there any > > program could combine them to one pdb? > > Any suggestion would be appreciated. Thank you very much. > > Best Regard, > > jaishin > >
