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I guess you're hitting the jmax=5000 limit set on line 205 of $CCP4/src/overlapmap.f (CORR ATOM option) In which case, you need to increase this and recompile. It doesn't look like this has been changed in a long while, so we should up the default. Cheers Martyn On Fri, 2006-09-29 at 13:19 -0700, Kumar, Abhinav wrote: > Hi, > > I am running overlapmap to calculate CC between atoms in a model and > the map. The output, however, stops after 5000 atoms. > > Is there a way to get it to output for the remaining atoms. > > I tried spltting the model into separate chains, but the results from > the individual chains are different from the a run with the full > model. > > Thanks > Abhinav > > Stanford Synchrotron Radiation Laboratory > Joint Center for Structural Genomics > Mail Stop 99 > Phone: (650) 926-5596 > Fax: (650) 926-3292 > > >
