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I've just run a couple of arp-warp runs to automatically build an initial
model. In both cases, the ##_arp_warp directory is deleted at the end.
This directory contains the pdb file of the polyalanine/docked structure.
The only pdb file that is saved is the one with the list of dummy atoms.
How can you override this directory being deleted? Basically it generated
a structure with 50% of it docked into the sequence, and another 30% as a
polyalanine model, and then deleted it (the arp_pept_##.pdb file).

I don't recall this happening before, so this is with ccp4-6.0.1 and
arp_warp-6.1.1.

Bernie Santarsiero

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