I need to do this for many many pdb files so, is there any methods to get protein chain only automatically?
Best, Hyunchul 2007-08-30 (木) の 15:16 +0100 に Antony Oliver さんは書きました: > You could simply hand-edit the PDB file to remove the offending ligand. > > Regards, > > Tony. > > > > Hi, all > > I want to write a specific chain structures(protein). I tried PDBSET and > biopython but they couldn't deal with some exceptional case. > For example, some pdb files contain both protein structure and ligand > structure in a given chain ID(e.g. 'A' or ' ') > > How can I obtain full chain structures without ligand structure by other > methods than clicking one by one at any website. > > Thanks in advance. > > Best, > Hyunchul Kim > > -- > Dr Antony W Oliver > CR-UK DNA Repair Enzymes Group > Section of Structural Biology > The Institute of Cancer Research > 237 Fulham Road > Chelsea > London SW3 6JB > Phone: 020 7153 5451 / 5571 > Fax: 020 7153 5457 > E-mail: [EMAIL PROTECTED] > -- > > > > The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company > Limited by Guarantee, Registered in England under Company No. 534147 with its > Registered Office at 123 Old Brompton Road, London SW7 3RP. > > This e-mail message is confidential and for use by the addressee only. If > the message is received by anyone other than the addressee, please return the > message to the sender by replying to it and then delete the message from your > computer and network.
