<flame>
As an aside, does anyone understand why MSE is not an amino-acid?
Phil
</flame>

On 30 Aug 2007, at 15:31, Clemens Vonrhein wrote:

If your PDB file conforms to standard

  http://www.wwpdb.org/documentation/format23/sect9.html#ATOM

you could do

  % egrep "^CRYST|^SCALE|^ATOM" your.pdb > standard_residues_only.pdb

You'll miss the 'non-standard' Se-MET residue 'MSE' ;-)

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