Li Yang,
I usually use three ways to solve that:
1 CNS anneal
2 coot  edit backbone  torsions
and the last redo manual build as Paul's suggestions for low resolution data in COOT FAQ if you using coot and the resolution of your data is low
Good Luck!
liu
yang li wrote:
Dear all,
Does anybody have some good experiences or methods to adjust the outlier dihedral angles? I have a model most of which was builded manually, so though the Rfree is acceptable--0.29--many dihedral angles are not right. it is difficult to me to correct them. If there is any software to do it easily, it should be great. Thanks!

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