conancao wrote:
>         I have problem to supperimpose 2 homologous proteins(only one 
> subunit is homologous) in coot.Could anybody give suggestion either 
> using coot or other easily availabe software to superimpose homologous 
> structures(pdb) and give a finial superimposed pdb or picture. Thank you.

In Coot, go to Calculate/SSM Superpose or Calculate/LSQ Superpose, or
see the 'Coordinate Related Features' of the User manual:
http://www.ysbl.york.ac.uk/~emsley/coot/doc/user-manual.html#SEC86

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