Under 10.5.X, sudo doesn't inherit the environment. So the best thing
to do is start a root process like this:
/bin/bash
(or /bin/zsh or /bin/tcsh )
source /usr/local/ccp4-6.0.2/include/ccp4.setup-bash
(or whatever it is for your shell)
Then issue ccp4i
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Aug 25, 2008, at 6:05 AM, Anita Bentley wrote:
My faithful old Mac G5 siezed up and I have to use a brand new
MacBook Pro from now on. It's an Intel machine with Leopard.
I managed to install CCP4 together with TLK/BLK programmes. After a
long while searching for bltwish routines I discovered that they are
automatically installed in /usr/local/bin and not in /sw/bin as
suggested in the ccp4 setup files (!). With this problem sorted out,
I was able to start ccp4i GUI fine.
I get the message that "I am the first person to run this
version ... and should get the right person to configure the
interface ...". However, when I try to run ccp4i with "sudo" in
order to have the priviledges to configure it, I am unable to run it:
"macbookpro-bentley 7% sudo ccp4i
/usr/local/ccp4-6.0.2/bin/ccp4i: line 4: /bltwish: No such file or
directory
/usr/local/ccp4-6.0.2/bin/ccp4i: line 4: exec: /bltwish: cannot
execute: No such file or directory"
I've modified the -sh and -csh files (I have a one-line login.com
to get me under csh as user) to no avail. What do I have to do to be
able to configure the interface???
The underlying problem is that I cannot run REFMAC in the present
state of things, I get the following error:
"Error from script
/usr/local/ccp4-6.0.2/share/ccp4i/scripts/refmac5.script: can't read
"cell": no such variable"
which makes me think the configuration of the interface is not quite
right.
Any help is greatly appreciated!
Anita
Anita Lewit-Bentley
LBPA
Ecole Normale Supérieure de Cachan
61, avenue du Président Wilson
94235 Cachan cedex
FRANCE
tel: 33-(0)1-47 40 76 65
fax: 33-(0)1 47 40 76 71
e-mail: [EMAIL PROTECTED]
