Glad it worked.
I should have written
"sudo /bin/bash"
or
"sudo /bin/zsh"
or
"sudo /bin/tcsh"
followed by sourcing the appropriate startup script.
However, if I run the tcsh command, I get this error:
limit: stacksize: Can't remove limit (Invalid argument)
oddly, this does not happen with a non-root version of tcsh. It is
easier I think just to use /bin/bash or /bin/zsh in this case.
On Aug 25, 2008, at 9:09 AM, Anita Bentley wrote:
Thanks a lot for this hint: it works! Including REFMAC, which ran to
completion and used Arp/Warp to add waters successfully.
Anita
Le 25 août 08 à 16:04, William G. Scott a écrit :
Under 10.5.X, sudo doesn't inherit the environment. So the best
thing to do is start a root process like this:
/bin/bash
(or /bin/zsh or /bin/tcsh )
source /usr/local/ccp4-6.0.2/include/ccp4.setup-bash
(or whatever it is for your shell)
Then issue ccp4i
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Aug 25, 2008, at 6:05 AM, Anita Bentley wrote:
My faithful old Mac G5 siezed up and I have to use a brand new
MacBook Pro from now on. It's an Intel machine with Leopard.
I managed to install CCP4 together with TLK/BLK programmes. After
a long while searching for bltwish routines I discovered that they
are automatically installed in /usr/local/bin and not in /sw/bin
as suggested in the ccp4 setup files (!). With this problem sorted
out, I was able to start ccp4i GUI fine.
I get the message that "I am the first person to run this
version ... and should get the right person to configure the
interface ...". However, when I try to run ccp4i with "sudo" in
order to have the priviledges to configure it, I am unable to run
it:
"macbookpro-bentley 7% sudo ccp4i
/usr/local/ccp4-6.0.2/bin/ccp4i: line 4: /bltwish: No such file or
directory
/usr/local/ccp4-6.0.2/bin/ccp4i: line 4: exec: /bltwish: cannot
execute: No such file or directory"
I've modified the -sh and -csh files (I have a one-line login.com
to get me under csh as user) to no avail. What do I have to do to
be able to configure the interface???
The underlying problem is that I cannot run REFMAC in the present
state of things, I get the following error:
"Error from script
/usr/local/ccp4-6.0.2/share/ccp4i/scripts/refmac5.script: can't
read "cell": no such variable"
which makes me think the configuration of the interface is not
quite right.
Any help is greatly appreciated!
Anita
Anita Lewit-Bentley
LBPA
Ecole Normale Supérieure de Cachan
61, avenue du Président Wilson
94235 Cachan cedex
FRANCE
tel: 33-(0)1-47 40 76 65
fax: 33-(0)1 47 40 76 71
e-mail: [EMAIL PROTECTED]
