Hello Priya,
Here is a great example of the identification of a channel in a
protein. The authors used CAVENV to identify the channel and
confirmed the channel by solving the structure of Xenon-pressured
crystals.
Hector
Xenon in and at the End of the Tunnel of Bifunctional Carbon Monoxide
Dehydrogenase/Acetyl-CoA Synthase
Tzanko I. Doukov, Leah C. Blasiak, Javier Seravalli, Stephen W.
Ragsdale, and Catherine L. Drennan
http://pubs.acs.org/cgi-bin/abstract.cgi/bichaw/2008/47/i11/abs/bi702386t.html
Hector H Hernandez, PhD
Massachusetts Institute of Technology
Civil and Environmental Engineering
Postdoctoral Associate
[EMAIL PROTECTED]
On Nov 10, 2008, at 10:21 AM, hari jayaram wrote:
Hi Priya ,
I would recommend MOLE from the list kindly compiled by "Jiamudu" on
the CCP4 wiki
The list is available at the link below
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Programs_for_representing_the_surface_of_a_channel_inside_protein
Hari
On Mon, Nov 10, 2008 at 9:16 AM, Priya Mudgal <[EMAIL PROTECTED]
> wrote:
Hello All,
Is there any program that can find if there is a channel inside a
protein?
I also would like to know what are the alternative ways to find out
a channel inside a protein.
Thanks a lot.
Priya
