Thank you for all the suggestions! In case this is helpful to anyone else, what seems most useful for multi-domain proteins aside from TOPS ( http://www.tops.leeds.ac.uk/ which is down currently) is a ccp4 program topdraw. (http://stein.bioch.dundee.ac.uk/~charlie/software/topdraw/) Charu
On 11/10/08 1:55 PM, "Santarsiero, Bernard D." <[EMAIL PROTECTED]> wrote: > PDBSum is the easiest to use for this, and some other useful information: > > http://www.ebi.ac.uk/pdbsum/ > > Bernie > > On Mon, November 10, 2008 12:34 pm, hari jayaram wrote: >> Hi CharuEspript is an excellent resource for this >> It is particulary useful when you want a secondary structure schematic >> with >> an alignment and other information relevant to the structure .. .It has a >> friendly web interface at >> http://espript.ibcp.fr/ESPript/ESPript/ >> >> Fr eg >> http://espript.ibcp.fr/ESPript/ESPript/images/vp7.gif >> >> Hope this Helps >> Hari Jayaram >> >> >> On Mon, Nov 10, 2008 at 1:53 PM, Charu Chaudhry >> <[EMAIL PROTECTED]>wrote: >> >>> Hello, >>> Does anyone know of a program that can automatically generate a folding >>> pattern schematic diagram showing the arrangement of secondary structure >>> elements for a protein ? Presumably one would have to feed it a PDB file >>> with secondary structure assigned from DSSP. >>> Thanks! >>> Charu >>> Mayer lab/NIH >>> >>
