Hi Joe, Do you have insertions (e.g. residues 62A, 62B, 62C) or deletions (e.g. residues 42 and 45) which are connected? These may cause broken connectivities in pymol. In this case, I would renumber the pdb file and see how it then displays.
Best regards, Herman -----Original Message----- From: CCP4 bulletin board [mailto:[email protected]] On Behalf Of Joe Xtal Sent: Monday, March 02, 2009 5:08 PM To: [email protected] Subject: [ccp4bb] Broken chain in Pymol display Hi all, I tried to display a refined structure (final steps in phenix.refine) in Pymol, but several places are not connected. BTW, the structure displays normally in Coot and bond angle and length deviation are below 1.0 and 0.006, respectively. Thank you, Joe
