Hi Joe, check chainID and segID; there might be a break in one of them not noticed by phenix because it uses the other one, but then leading to an apparent backbone break in coot because it uses the other one ...
Best Clemens -----Original Message----- From: CCP4 bulletin board [mailto:[email protected]] On Behalf Of Joe Xtal Sent: Monday, March 02, 2009 5:08 PM To: [email protected] Subject: [ccp4bb] Broken chain in Pymol display Hi all, I tried to display a refined structure (final steps in phenix.refine) in Pymol, but several places are not connected. BTW, the structure displays normally in Coot and bond angle and length deviation are below 1.0 and 0.006, respectively. Thank you, Joe
