Hi,
If you were trying to re-run a job created with ccp4 6.1.0 or earlier,
this is a known bug. Have a look at:
http://www.ccp4.ac.uk/problems.php#6.1.1-programs
If that is the case, there is a new refmac.tcl file that solves that
problem.
Best,
Miguel
Le 16 mai 09 à 12:42, Kay Diederichs a écrit :
Boaz,
I recently saw the same message, after installing (binary) 6.1.1 .
The workaround that seems to work for me is to start a new project
from scratch.
The "STARTING" problem may have to do with the line
127.0.0.1 localhost.localdomain localhost
missing from /etc/hosts - did you check that?
HTH,
Kay
Boaz Shaanan schrieb:
Hi,
On a newly installed v 6.1.1 I (built from source) I can't get
refmac to start from the gui (other programs, such as pointless and
phaser, run fine). The latest patches have also been installed.
When I start a refmac job that runs file under 6.1.0 (the binary
built) the job gets stuck and the gui reports 'starting' for the
job without switching to 'running'. The latest refmac version from
York is installed (5.0.92) and again, it runs fine under 6.1.0.
These lines appear in the window from which the ccp4i was launched
after starting the job:
can't set "ATOM(0)": variable isn't array
while executing
"set [subst $root]([subst $indx0]) """
(procedure "ExecuteScript" line 50)
invoked from within
"ExecuteScript $system(SCRIPT)"
("script" arm line 8)
invoked from within
"switch $system(RUN_MODE) \
script {
source [file join $env(CCP4I_TOP) src execute.tcl]
source [file join $env(CCP4I_TOP) src job_utils..."
(file "/home/boaz/ccp4/ccp4-6.1.1/ccp4i/bin/ccp4ish.tcl" line 145)
invoked from within
"source [file join $env(CCP4I_TOP) bin ccp4ish.tcl]"
(file "/home/boaz/ccp4/ccp4-6.1.1/ccp4i/bin/ccp4ish" line 12)
Does anybody have a clue on what could have gone wrong and how to
fix the problem ?
Thanks,
Boaz
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel
Phone: 972-8-647-2220 ; Fax: 646-1710
Skype: boaz.shaanan
--
Miguel Ortiz Lombardía
Architecture et Fonction des Macromolécules Biologiques
UMR6098 ( CNRS, U. de Provence, U. de la Méditerranée )
Case 932
163 Avenue de Luminy
13288 Marseille cedex 9
France
Tel : +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr
Web: http://www.pangea.org/mol/spip.php?rubrique2
--
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
