Hi, This solved the problem too, thanks. I assumed the fixes you pointed out were included in the patch files in the ccp4 download area.
Boaz ----- Original Message ----- From: Miguel Ortiz Lombardia <[email protected]> Date: Saturday, May 16, 2009 15:09 Subject: Re: [ccp4bb] problem starting refmac from ccp4i gui To: [email protected] > Hi, > > If you were trying to re-run a job created with ccp4 6.1.0 or > earlier, > this is a known bug. Have a look at: > > http://www.ccp4.ac.uk/problems.php#6.1.1-programs > > If that is the case, there is a new refmac.tcl file that solves > that > problem. > > Best, > > > Miguel > > Le 16 mai 09 à 12:42, Kay Diederichs a écrit : > > > Boaz, > > > > I recently saw the same message, after installing (binary) > 6.1.1 . > > The workaround that seems to work for me is to start a new > project > > from scratch. > > > > The "STARTING" problem may have to do with the line > > 127.0.0.1 localhost.localdomain localhost > > missing from /etc/hosts - did you check that? > > > > HTH, > > > > Kay > > > > Boaz Shaanan schrieb: > >> Hi, > >> On a newly installed v 6.1.1 I (built from source) I can't > get > >> refmac to start from the gui (other programs, such as > pointless and > >> phaser, run fine). The latest patches have also been > installed. > >> When I start a refmac job that runs file under 6.1.0 (the > binary > >> built) the job gets stuck and the gui reports 'starting' for > the > >> job without switching to 'running'. The latest refmac version > from > >> York is installed (5.0.92) and again, it runs fine under 6.1.0. > >> These lines appear in the window from which the ccp4i was > launched > >> after starting the job: > >> can't set "ATOM(0)": variable isn't array > >> while executing > >> "set [subst $root]([subst $indx0]) """ > >> (procedure "ExecuteScript" line 50) > >> invoked from within > >> "ExecuteScript $system(SCRIPT)" > >> ("script" arm line 8) > >> invoked from within > >> "switch $system(RUN_MODE) \ > >> script { > >> source [file join $env(CCP4I_TOP) src > execute.tcl]>> source [file join > $env(CCP4I_TOP) src job_utils..." > >> (file "/home/boaz/ccp4/ccp4- > 6.1.1/ccp4i/bin/ccp4ish.tcl" line 145) > >> invoked from within > >> "source [file join $env(CCP4I_TOP) bin ccp4ish.tcl]" > >> (file "/home/boaz/ccp4/ccp4- > 6.1.1/ccp4i/bin/ccp4ish" line 12) > >> Does anybody have a clue on what could have gone wrong and > how to > >> fix the problem ? > >> Thanks, > >> Boaz > >> Boaz Shaanan, Ph.D. > >> Dept. of Life Sciences > >> Ben-Gurion University of the Negev > >> Beer-Sheva 84105 > >> Israel > >> Phone: 972-8-647-2220 ; Fax: 646-1710 > >> Skype: boaz.shaanan > >> > > > > > > -- > Miguel Ortiz Lombardía > Architecture et Fonction des Macromolécules Biologiques > UMR6098 ( CNRS, U. de Provence, U. de la Méditerranée ) > Case 932 > 163 Avenue de Luminy > 13288 Marseille cedex 9 > France > Tel : +33(0) 491 82 55 93 > Fax: +33(0) 491 26 67 20 > e-mail: [email protected] > Web: http://www.pangea.org/mol/spip.php?rubrique2 > > > -- > This message has been scanned for viruses and > dangerous content by MailScanner, and is > believed to be clean. > Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel Phone: 972-8-647-2220 ; Fax: 646-1710 Skype: boaz.shaanan
