hi I installed CCP4 with Coot downloaded as a binary from the CCP4 website on a 64bit Ubuntu 9.04.
The installation was flawless and the setup scripts ran like a charm. however, when i type ccp4i to get the GUI. i get the following error message: exec: 4: /usr/local/xtal/tcltk++/bin/bltwish: not found bltwish is there in the specified directory, which i manually checked. for coot, i get the following error messages:. COOT_PREFIX is /usr/local/xtal/Coot-0.5.2 /usr/local/xtal/Coot-0.5.2/bin/coot-real /usr/local/xtal/Coot-0.5.2/bin/coot: 123: /usr/local/xtal/Coot-0.5.2/bin/coot-real: not found /usr/local/xtal/Coot-0.5.2/bin/coot: 130: /usr/local/xtal/Coot-0.5.2/bin/guile: not found All these files are there in the specified directories, which i checked manually. But still i could not run. Am i doing some thing terribly wrong ? sincerely sankar On Sat, 04 Jul 2009 Thomas J Magliery PhD wrote : > Hi, I just installed the 64-bit version of Ubuntu 9.04 > Desktop, and then > I installed CCP4 6.1.1 using the standard package and > installation > script. I can run ccp4i successfully. However, when I > try to run Coot, > I get a bunch of errors. I think the problem is that > Coot was compiled > with 32-bit libraries, which I don't have. > > Is there some way to fix this without compiling Coot or > re-installing > with 32-bit Ubuntu? Who knows how, but I have CCP4 > (6.0.2) and Coot > (0.5-pre-1) working on my 64-bit FC8 laptop. > > Thanks, > Tom > > === > COOT_PREFIX is /usr/local/CCP4/Coot-0.5.2 > /usr/local/CCP4/Coot-0.5.2/bin/coot-real > Acquiring application resources from > /usr/local/CCP4/Coot-0.5.2/share/coot/cootrc > Gtk-Message: Failed to load module > "canberra-gtk-module": > /usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so: > wrong ELF class: > ELFCLASS64 > INFO:: splash_screen_pixmap_dir > /usr/local/CCP4/Coot-0.5.2/share/coot/pixmaps > INFO:: Colours file: /usr/local/CCP4/Coot-0.5.2/share/co- > ot/colours.def > loaded > INFO:: Using Standard CCP4 Refmac dictionary from > CLIBD_MON: > /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers/ > There are 118 data in > /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//list/mon_l- > ib_list.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//a/ALA.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//a/ASP.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//a/ASN.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//c/CYS.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//g/GLN.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//g/GLY.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//g/GLU.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//p/PHE.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//h/HIS.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//i/ILE.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//l/LYS.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//l/LEU.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//m/MET.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//m/MSE.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//p/PRO.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//a/ARG.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//s/SER.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//t/THR.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//v/VAL.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//t/TRP.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//t/TYR.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//p/PO4.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//s/SO4.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//g/GOL.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//e/ETH.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//c/CIT.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//a/AR.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//a/AD.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//c/CR.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//c/CD.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//g/GR.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//g/GD.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//t/TD.cif > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/- > monomers//u/UR.cif > Reading coordinate file: > /usr/local/CCP4/Coot-0.5.2/share/coot/standard-residues.- > pdb > PDB file /usr/local/CCP4/Coot-0.5.2/share/coot/standard-- > residues.pdb has > been read. > Spacegroup: P 1 > Cell: 40.631 109.18 93.243 90 90 90 > /usr/lib/gio/modules/libgioremote-volume-monitor.so: > wrong ELF class: > ELFCLASS64 > Failed to load module: /usr/lib/gio/modules/libgioremote- > -volume-monitor.so > /usr/lib/gio/modules/libgvfsdbus.so: wrong ELF class: > ELFCLASS64 > Failed to load module: /usr/lib/gio/modules/libgvfsdbus.- > so > /usr/lib/gio/modules/libgiogconf.so: wrong ELF class: > ELFCLASS64 > Failed to load module: /usr/lib/gio/modules/libgiogconf.- > so > initalize graphics molecules...done. > (filter-fileselection-filenames-state) > (get-active-map-drag-flag) > (use-graphics-interface-state) > ERROR: In procedure dynamic-link: > ERROR: file: "libguile-srfi-srfi-1-v-3", message: > "/usr/lib/libguile-srfi-srfi-1-v-3.so.3: wrong ELF > class: ELFCLASS64" > Gtk-Message: Failed to load module > "canberra-gtk-module": > /usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so: > wrong ELF class: > ELFCLASS64 > coot-exe: "/usr/local/CCP4/Coot-0.5.2/bin/coot-real" > coot-version: > /usr/local/CCP4/Coot-0.5.2/bin/coot-real > core: #f > No core file found. No debugging > === > > P.S. Hi Paul. > > -- > Thomas J. Magliery, Ph.D. > Assistant Professor > Department of Chemistry > & Department of Biochemistry > The Ohio State University > 1043 Evans Laboratory > 100 West 18th Ave. > Columbus, OH 43210-1185 > > (614) 247-8425 office > (614) 292-1685 fax > [email protected] > http://www.chemistry.ohio-state.edu/~magliery Sankar narayanan M.R, C/o Prof. S. Krishnaswamy, Dept. of Genetic Engineering, School of Biotechnology, Madurai Kamaraj University, Madurai 625021. TN, INDIA Phone : +91 452 245 9931, +91 452 245 9141, Mobile : +91 94860 88613 e-mail:[email protected]
