I can suggest 2 things:
look for the work by Janet Thornton et alteri, they have analysed loops
(and classified them) in protein structures so that they might have
loop modelling tools;
also Gert Vriend's program WHATIF might have something along those
lines... I think the program still exists (it is gigantic) and has been
ported to recent Unices.
Fred.
Tommi Kajander wrote:
Dear all
I was wondering if anyone knows a simple way to generate a missing
loop (strech of amino acids)
really in just some simple manner (no fancy minization necessary, of
course some constraints probably dont
hurt), just for visualization purposes of further simulations etc....
thanks!
tommi
