Sloop can generate both a best conformation and ensembles.
http://www.ysbl.york.ac.uk/~cowtan/sloop/sloop.html
Coot has both its own loop building code, and an interface to loopy from
ARP/wARP. If people like sloop we'll add that to Coot too in due course.
Tommi Kajander wrote:
Dear all
I was wondering if anyone knows a simple way to generate a missing loop
(strech of amino acids)
really in just some simple manner (no fancy minization necessary, of
course some constraints probably dont
hurt), just for visualization purposes of further simulations etc....
thanks!
tommi
