lei feng wrote:
I am wondering how to make covalent bond in coot, between a modified substrate and regular protien residue I can not figure out how to make the bond.
That is, perhaps, because making a bond is not up to Coot - it's a "dictionary thing".
Have a look here: http://www.ysbl.york.ac.uk/mxstat/JLigand/1.html You probably want 2b.(If you want to display the bond in Coot, you'll probably need a LINK record.)
Paul.
