Hello, I am trying to use Buccaneer to improve the model of a protein/DNA complex which I solved recently. However, my initial attempt failed because the program deleted the DNA chains and rebuilt protein chains in their density. Is there a way to specify that the expected outcome should contain a DNA ligand--either in the input model pdb or the input sequence file--and to instruct the program to only work on the protein during building?
Thanks, Kyle Kyle T. Dolan Department of Biochemistry and Molecular Biology The University of Chicago [email protected]
