Kelly, This can be done with the Swiss-PDBviewer itself.
Download the viewer if you don't have it. load your pdb ( File > Open PDB File... ) load the sequence you want to thread (fasta format) ( SwissModel > Load Raw Sequence from Amino Acids...) then thread with ( Fit > Fit Raw Sequence) Good Luck, -bob On Wed, May 12, 2010 at 12:10 PM, Kelly Daughtry <[email protected]> wrote: > Hello all, > I would like to thread one protein sequence onto a structure I recently > solved, and has not been submitted to the pdb. > I found the swiss-model website, which is an excellent tool for inputing a > template sequence and target sequence (which is what I want to do), but it > only allows you to select a PDB ID, and not to upload your own pdb file. > Does anyone know where I can do this online? I'm thisclose to just changing > each amino acid in coot (with the amount of searching I've done, it's about > equal time!). > Thanks in advance, > Kelly Daughtry > ******************************************************* > Kelly Daughtry > PhD Candidate > Department of Physiology and Biophysics > Boston University School of Medicine > 590 Commonwealth Ave > R 390 > Boston MA, 02215 > (P) 617-358-5548 > ******************************************************* >
