Kelly, You can do it with swiss-model, just have to use the alignment mode. I will ask for a pdb or RCSB code. Also, in the past I have found Jigsaw 3D model server to be a comparable tool.
Scott On Wed, May 12, 2010 at 10:10 AM, Kelly Daughtry <[email protected]> wrote: > Hello all, > I would like to thread one protein sequence onto a structure I recently > solved, and has not been submitted to the pdb. > > I found the swiss-model website, which is an excellent tool for inputing a > template sequence and target sequence (which is what I want to do), but it > only allows you to select a PDB ID, and not to upload your own pdb file. > > Does anyone know where I can do this online? I'm thisclose to just changing > each amino acid in coot (with the amount of searching I've done, it's about > equal time!). > > Thanks in advance, > Kelly Daughtry > > ******************************************************* > Kelly Daughtry > PhD Candidate > Department of Physiology and Biophysics > Boston University School of Medicine > 590 Commonwealth Ave > R 390 > Boston MA, 02215 > (P) 617-358-5548 > ******************************************************* > -- Scott D. Pegan, Ph.D. Assistant Professor Chemistry & Biochemistry University of Denver
