Hi, I suggest you to try HADDOCK if you have some interaction data, such as the binding site, key residues, etc. It can use the interaction data as a restrain and make the dock more accurate. And the web interface of the HADDOCK server is very easy to handle. Best wishes.
On Tue, Jun 8, 2010 at 2:59 PM, xaravich ivan <[email protected]>wrote: > Dear CCP4 users, > Though this is not directly linked to ccp4, i bet many of you have solved > crystal structures of the ligand and receptor separately and tried to dock > it. is there any program that docks two protein molecules. We have an > overall idea where the protein will bind to the receptor. Is there something > like AUTODOCK for macromolecules? > > It will be amzing if I get some suggestions. > > Thanks in advance, > Ivan > -- Jiamu Du, Ph.D. Postdoctoral Research Fellow Laboratory of Structural Biology Memorial Sloan-Kettering Cancer Center RRL 269, 430 E 67th Street New York, NY, 10021 E-mail: [email protected] Tel: (917) - 292 - 4616
