Hello, I have tried HADDOCK recently and have got some parsing related error! (indicative of some errors in the input PDB files.). I have checked my pdb files and did not figure out anything wrong. May I please get some suggestions about it from any of the experienced ones in this area?
regards, Anil --- On Wed, 9/6/10, Jiamu Du <[email protected]> wrote: From: Jiamu Du <[email protected]> Subject: Re: [ccp4bb] Softwares for Protein-Protein docking! To: [email protected] Date: Wednesday, 9 June, 2010, 10:25 PM Hi, I suggest you to try HADDOCK if you have some interaction data, such as the binding site, key residues, etc. It can use the interaction data as a restrain and make the dock more accurate. And the web interface of the HADDOCK server is very easy to handle. Best wishes. On Tue, Jun 8, 2010 at 2:59 PM, xaravich ivan <[email protected]> wrote: Dear CCP4 users, Though this is not directly linked to ccp4, i bet many of you have solved crystal structures of the ligand and receptor separately and tried to dock it. is there any program that docks two protein molecules. We have an overall idea where the protein will bind to the receptor. Is there something like AUTODOCK for macromolecules? It will be amzing if I get some suggestions. Thanks in advance, Ivan -- Jiamu Du, Ph.D. Postdoctoral Research Fellow Laboratory of Structural Biology Memorial Sloan-Kettering Cancer Center RRL 269, 430 E 67th Street New York, NY, 10021 E-mail: [email protected] Tel: (917) - 292 - 4616
