You can use the command
sed -e "s/INDEx\(.*\) FOBS= \(.*\) SIGMA= \(.*\) TEST=\(.*\)/\1 \2 \3 \4/g" 
file.cv > file.hkl

in order to get rid of all the words and convert the file into a simple
hkl-file. After removing the header you can use f2mtz to convert it to an
mtz-file.
Make sure that you DO NOT use a FORMAT line in f2mtz since it will then use free
format to read in the hkl-file, which will separate the entries by white spaces.

Tim


On Tue, Sep 28, 2010 at 03:41:29PM +0100, Jeremiah Farelli wrote:
> We recently had this problem in our lab.  
> 
> No matter what we tried, we could not get convert2mtz (or any other program) 
> to work properly.  We were probably doing something wrong with the 
> fortran....?
> 
> Depending on how far along you are, you can try using phenix.refine.  Just 
> input your model and the .cv file and phenix will export a new .cv file with 
> Free-R flags intact.  
> 
> If you aren't to the model building stage yet, this won't work however. 
-- 
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

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