I took a look at his slides--looks pretty interesting, and I would
have liked to have heard the talk! I am not sure I would be ready to
advocate having no more journals, but I am interested in thinking
about the idea. Imagine just putting your data up on the website, and
you're finished! And then wait for comments/links to show up, I
guess--would that be the metric for grants/funding? I also wonder what
could be done so that the record would not be changed?

JPK

On Thu, Nov 18, 2010 at 3:14 AM, John R Helliwell <[email protected]> wrote:
> Dear Jacob,
> Your posting reminds me of a Research Information Network Conference I
> went to in 2006 in London.
> Your views coincide with a presenter there, Peter Mika.
> His talk can be found at:-
> http://www.rin.ac.uk/news/events/data-webs-new-visions-research-data-web
> In his talk he referred to:- openacademia.org
> Peter Mika and I were on the Closing Panel; he advocated that
> refereeing is an imposition on a researcher's
> individual freedom and thus he/she should 'publish' their work on
> their own website. By contrast, I argued in favour of
> Journals and peer review, both with respect to my articles and my
> experiences as an Editor of more than one Journal.
>
> I would be happy to continue corresponding on this not least as
> publication should be a varied spectrum of options.
> Also I feel obliged to say that one cannot apply simply, by rote,
> 'Learned Society publisher is good', 'commercial publisher is bad';
> there are exceptions in both camps. [in effect this was the tone of my
> last posting.]
>
> Greetings,
> John
>
> On Wed, Nov 17, 2010 at 8:13 PM, Jacob Keller
> <[email protected]> wrote:
>> I guess the practice of being "on your best behavior" is good in terms
>> of getting the research trimmed into shape, but there is a huge
>> temptation to fudge things to get published, and to hide unpleasant
>> artifacts, as can be seen by the many recent (and not so recent)
>> scandals. Maybe as a lab website things would be more open. Also,
>> having a comments section always seemed like an excellent idea to me,
>> even for journals as they are, but would be really easy to implement
>> in a website. I would love to read comments from others in the field
>> about the papers I read, as sometimes people can help to point out
>> gaping holes where one might not see them otherwise. It would be like
>> "journal club" for the whole scientific community.
>>
>> Jacob
>>
>> On Wed, Nov 17, 2010 at 2:08 PM, Jrh <[email protected]> wrote:
>>> Dear Jacob
>>> Re journals out of the window:-
>>> Well, like democracy, journals may not be ideal but I believe other 
>>> alternatives such as free for all personal website publishing, are worse. 
>>> So, journals that are community driven offer an optimal approach, 
>>> critically based on specialist peer review. That is why our community 
>>> effort IUCr Journals I believe are so important. Open access, where we can 
>>> sustain it financially, also can convey access to the widest readership ie 
>>> that the high impact magazines currently, mainly, command.
>>> All best wishes,
>>> John
>>> Prof John R Helliwell DSc
>>>
>>>
>>> On 17 Nov 2010, at 18:28, Jacob Keller <[email protected]> 
>>> wrote:
>>>
>>>> Supplementary info seems to me to be a double-edged sword--I just read
>>>> a Nature article that had 45 pages of supplementary info. This means
>>>> that you get a lot more for your money, but all of the methods and
>>>>
>>>> Why not have papers be as long as the authors want, now that almost
>>>> everything is internet-based? It would make the papers much more
>>>> organized overall, and would obviate the reference issue mentioned in
>>>> this thread. To avoid them being too too long, reviewers could object
>>>> to long-windedness etc. But, it would definitely make for a more
>>>> complete "lab notebook of the scientific community," assuming that
>>>> that is what we are after.
>>>>
>>>> Incidentally, I have been curious in the past why journals are not
>>>> going out the window themselves--why not have individual labs just
>>>> post their most recent data and interpretations on their own websites,
>>>> with a comments section perhaps? (I know there are about a thousand
>>>> cynical reasons why not...) One could even have a place for
>>>> "reliability rating" or "impact rating" on each new chunk of data.
>>>> Anyway, it would be much more like a real-time, public lab notebook,
>>>> and would make interaction much faster, and cut out the publishing
>>>> middlemen.
>>>>
>>>> JPK
>>>>
>>>> On Wed, Nov 17, 2010 at 11:48 AM, Phoebe Rice <[email protected]> wrote:
>>>>> Another unfortunate aspect of this sort of editorial policy is that many 
>>>>> of these papers contain almost no technical information at all, except 
>>>>> for the supplement.  I've started to avoid using Nature papers for class 
>>>>> discussions becuase they leave the students so puzzled, and with a 
>>>>> glossiness-is-all-that-matters idea of science.
>>>>>
>>>>>
>>>>> =====================================
>>>>> Phoebe A. Rice
>>>>> Dept. of Biochemistry & Molecular Biology
>>>>> The University of Chicago
>>>>> phone 773 834 1723
>>>>> http://bmb.bsd.uchicago.edu/Faculty_and_Research/01_Faculty/01_Faculty_Alphabetically.php?faculty_id=123
>>>>> http://www.rsc.org/shop/books/2008/9780854042722.asp
>>>>>
>>>>>
>>>>> ---- Original message ----
>>>>>> Date: Wed, 17 Nov 2010 17:12:26 +0000
>>>>>> From: CCP4 bulletin board <[email protected]> (on behalf of John R 
>>>>>> Helliwell <[email protected]>)
>>>>>> Subject: Re: [ccp4bb] Citations in supplementary material
>>>>>> To: [email protected]
>>>>>>
>>>>>> Dear Victor,
>>>>>> I strongly support the stance that is in the Acta D Editorial.
>>>>>> Manfred Weiss worked very hard assembling those details and over quite
>>>>>> some time; he deserves our thanks.
>>>>>> Greetings,
>>>>>> John
>>>>>>
>>>>>>
>>>>>> On Wed, Nov 17, 2010 at 4:06 PM, Victor Lamzin <[email protected]> 
>>>>>> wrote:
>>>>>>> Dear All,
>>>>>>>
>>>>>>> I would like to bring to your attention the recent Editorial in Acta 
>>>>>>> Cryst D
>>>>>>> (http://journals.iucr.org/d/issues/2010/12/00/issconts.html), which
>>>>>>> highlights the long-standing issue of under-citation of papers 
>>>>>>> published in
>>>>>>> the IUCr journals. The Editorial, having looked at the papers published 
>>>>>>> in
>>>>>>> 2009 in Nature, Science, Cell and PNAS, concluded:
>>>>>>>
>>>>>>> 'almost half of all references to publications in IUCr journals end up 
>>>>>>> being
>>>>>>> published in the supplementary material only... Not only does this mean 
>>>>>>> that
>>>>>>> the impact factor of IUCr journals should be higher, but also that the 
>>>>>>> real
>>>>>>> overall numbers of citations of methods papers are much higher than 
>>>>>>> what is
>>>>>>> reported, for instance, by the Web of Science'
>>>>>>>
>>>>>>> Although this topic may seem to concern mostly methods developers, I 
>>>>>>> think
>>>>>>> the whole research community will only benefit from more fair credit 
>>>>>>> that we
>>>>>>> all give to our colleagues via referencing their publications. What do 
>>>>>>> you
>>>>>>> think?
>>>>>>>
>>>>>>> Victor
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Professor John R Helliwell DSc
>>>>>
>>>
>>
>
>
>
> --
> Professor John R Helliwell DSc
>

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