Hello crystallogrphy, Using pdbset with the card EXCLUDE SIDE instead of PICK N O CA C CB would have the same effect.
Tim On Fri, Feb 11, 2011 at 06:14:53PM -0500, Ed Pozharski wrote: > --- > pdbset xyzin foo.pdb xyzout foofoo.pdb << eof > PICK N O CA C CB > eof > --- > > should do it > > > On Fri, 2011-02-11 at 18:03 -0500, crystallogrphy wrote: > > Hi, > > I am refining a low resolution data (4.7A). I want to cut off all side > > chains from my model because they cannot be seen from the density. > > Phenix pdbtools can only keep the backbone, but cannot keep the Cbeta > > atom. What program I can use to cut off all the side chain, but keep > > the Cbeta atoms? > > > > Thanks! > > _______________________________________________ > > phenixbb mailing list > > [email protected] > > http://phenix-online.org/mailman/listinfo/phenixbb > > -- > Edwin Pozharski, PhD, Assistant Professor > University of Maryland, Baltimore > ---------------------------------------------- > When the Way is forgotten duty and justice appear; > Then knowledge and wisdom are born along with hypocrisy. > When harmonious relationships dissolve then respect and devotion arise; > When a nation falls to chaos then loyalty and patriotism are born. > ------------------------------ / Lao Tse / -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen phone: +49 (0)551 39 22149 GPG Key ID = A46BEE1A
signature.asc
Description: Digital signature
