Hi all - Two of the grad students in our structural biology course are having similar problems installing Coot on their Mac computers using the stand-alone packages<http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/Stand-Alone_Coot> from Bill Scott's Crystallography on OS X website. I've pasted the Terminal outputs below from each of their machines below.
They're both getting Python "magic number" errors, which from what I know result from one Python version trying to run a .pyc file created with another Python version, but I'm not sure exactly how to work around it in the context of the stand-alone package. The students aren't planning to do much in the structural realm outside the course, and I don't want to have to go through installing Xcode and Fink to compile on their own, since they probably won't need it much past this one assignment. Any suggestions would be greatly appreciated. Thanks! Jared Sampson First student (3 week-old Macbook Pro, 10.6.6, stand-alone package for Version 0.6.2-pre-1-3250) ==================== $ coot Acquiring application resources from /Library/Coot/share/coot/cootrc INFO:: splash_screen_pixmap_dir /Library/Coot/share/coot/pixmaps INFO:: Colours file: /Library/Coot/share/coot/colours.def loaded There are 118 data in /Library/Coot/share/coot/lib/data/monomers/list/mon_lib_list.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ALA.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASP.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASN.cif [... and a bunch more monomers ...] There are 2 data in /Library/Coot/share/coot/lib/data/monomers/u/UR.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HOH.cif There are 1 data in /Library/Coot/share/coot/lib/data/monomers/ener_lib.cif sbase monomer dir: /share/sbase sbase files not found in /share/sbase Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb PDB file /Library/Coot/share/coot/standard-residues.pdb has been read. Spacegroup: P 1 Cell: 40.631 109.18 93.243 90 90 90 initalize graphics molecules...done. (filter-fileselection-filenames-state) (get-active-map-drag-flag) ImportError: Bad magic number in /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site.pyc ==================== second student (Macbook, 10.6.5, also Version 0.6.2-pre-1-3250) ==================== $ /usr/local/bin/coot Acquiring application resources from /Library/Coot/share/coot/cootrc INFO:: splash_screen_pixmap_dir /Library/Coot/share/coot/pixmaps INFO:: Colours file: /Library/Coot/share/coot/colours.def loaded There are 118 data in /Library/Coot/share/coot/lib/data/monomers/list/mon_lib_list.cif/ There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ALA.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASP.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASN.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CYS.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLN.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLY.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLU.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/p/PHE.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HIS.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/i/ILE.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/l/LYS.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/l/LEU.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/m/MET.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/e/ETH.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CIT.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/AR.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/AD.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CR.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CD.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GR.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GD.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/t/TD.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/u/UR.cif There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HOH.cif There are 1 data in /Library/Coot/share/coot/lib/data/monomers/ener_lib.cif sbase monomer dir: /share/sbase sbase files not found in /share/sbase Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb PDB file /Library/Coot/share/coot/standard-residues.pdb has been read. Spacegroup: P 1 Cell: 40.631 109.18 93.243 90 90 90 initalize graphics molecules...done. (filter-fileselection-filenames-state) (get-active-map-drag-flag) ImportError: Bad magic number in /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site.pyc ==================== -- Jared Sampson Xiangpeng Kong Lab NYU Langone Medical Center New York, NY 10016 212-263-7898 ------------------------------------------------------------ This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. 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